Fix missing flush in StreamCopyThread

It is possible to miss flush() invocation in StreamCopyThread.
In this case some data will not be sent to remote host and we will
wait forever (or until timeout) in src.read().

Use a counter to keep track of the flush requests.

Change-Id: Ia818be9b109a1674d9e2a9c78e125ab248cfb75b
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

org.eclipse.jgit/src/org/eclipse/jgit/util/io/StreamCopyThread.java

@@ -47,6 +47,7 @@
 import java.io.InputStream;
 import java.io.InterruptedIOException;
 import java.io.OutputStream;
+import java.util.concurrent.atomic.AtomicInteger;
 
 /** Thread to copy from an input stream to an output stream. */
 public class StreamCopyThread extends Thread {
@@ -56,7 +57,7 @@ public class StreamCopyThread extends Thread {
 
 	private final OutputStream dst;
 
-	private volatile boolean doFlush;
+	private final AtomicInteger flushCounter = new AtomicInteger(0);
 
 	/**
 	 * Create a thread to copy data from an input stream to an output stream.
@@ -82,10 +83,8 @@ public StreamCopyThread(final InputStream i, final OutputStream o) {
 	 * the request.
 	 */
 	public void flush() {
-		if (!doFlush) {
-			doFlush = true;
-			interrupt();
-		}
+		flushCounter.incrementAndGet();
+		interrupt();
 	}
 
 	@Override
@@ -94,10 +93,8 @@ public void run() {
 			final byte[] buf = new byte[BUFFER_SIZE];
 			for (;;) {
 				try {
-					if (doFlush) {
-						doFlush = false;
+					if (needFlush())
 						dst.flush();
-					}
 
 					final int n;
 					try {
@@ -125,4 +122,13 @@ public void run() {
 			}
 		}
 	}
+
+	private boolean needFlush() {
+		int i = flushCounter.get();
+		if (i > 0) {
+			flushCounter.decrementAndGet();
+			return true;
+		}
+		return false;
+	}
 }