changes for manuscript revisions

data/reports/checkm_qa_out.tsv

 Bin Id	Marker lineage	# genomes	# markers	# marker sets	0	1	2	3	4	5+	Completeness	Contamination	Strain heterogeneity
+Ecoli11303	f__Enterobacteriaceae (UID5124)	134	1169	335	0	1168	1	0	0	0	100.00	0.04	0.00
 HAMBI_0006	g__Pseudomonas (UID4525)	39	1389	369	3	1373	12	0	1	0	99.88	1.46	0.00
+HAMBI_0018	c__Alphaproteobacteria (UID3422)	26	529	308	0	523	6	0	0	0	100.00	0.48	16.67
 HAMBI_0097	f__Moraxellaceae (UID4680)	86	689	365	1	688	0	0	0	0	99.73	0.00	0.00
+HAMBI_0103	o__Sphingomonadales (UID3310)	26	569	293	3	564	2	0	0	0	99.42	0.68	0.00
 HAMBI_0105	f__Rhizobiaceae (UID3564)	78	840	354	0	840	0	0	0	0	100.00	0.00	0.00
 HAMBI_0262	c__Alphaproteobacteria (UID3422)	26	529	308	1	526	2	0	0	0	99.68	0.49	0.00
 HAMBI_0403	f__Comamonadaceae (UID4119)	39	693	323	1	688	4	0	0	0	99.85	0.67	0.00
@@ -10,6 +13,8 @@ HAMBI_1292	c__Gammaproteobacteria (UID4442)	899	311	184	0	311	0	0	0	0	100.00	0.0
 HAMBI_1299	f__Enterobacteriaceae (UID5124)	134	1173	336	4	1165	4	0	0	0	99.40	0.48	0.00
 HAMBI_1842	o__Sphingomonadales (UID3310)	26	569	293	2	563	4	0	0	0	99.59	0.68	75.00
 HAMBI_1896	p__Bacteroidetes (UID2605)	350	316	210	1	315	0	0	0	0	99.84	0.00	0.00
+HAMBI_1919	o__Burkholderiales (UID4002)	107	573	250	3	561	9	0	0	0	99.65	1.65	0.00
+HAMBI_1923	f__Flavobacteriaceae (UID2817)	81	511	283	1	504	5	1	0	0	99.65	1.23	0.00
 HAMBI_1972	c__Gammaproteobacteria (UID4754)	541	304	171	1	303	0	0	0	0	99.97	0.00	0.00
 HAMBI_1977	f__Pseudomonadaceae (UID4490)	183	842	319	0	841	1	0	0	0	100.00	0.10	0.00
 HAMBI_1988	p__Bacteroidetes (UID2591)	364	303	203	1	300	2	0	0	0	99.84	0.99	0.00
@@ -22,3 +27,5 @@ HAMBI_2659	f__Xanthomonadaceae (UID4214)	55	659	290	0	658	1	0	0	0	100.00	0.34	0.
 HAMBI_2792	o__Pseudomonadales (UID4679)	87	674	364	1	671	2	0	0	0	99.73	0.55	0.00
 HAMBI_3031	p__Bacteroidetes (UID2591)	364	301	202	0	300	1	0	0	0	100.00	0.03	0.00
 HAMBI_3237	o__Rhizobiales (UID3654)	92	480	318	1	474	3	2	0	0	99.69	1.16	11.11
+PsFluSBW25	g__Pseudomonas (UID4550)	78	1044	368	1	1040	3	0	0	0	99.93	0.17	0.00
+Smarc13880	f__Enterobacteriaceae (UID5066)	55	546	224	7	538	1	0	0	0	99.80	0.15	0.00

data/reports/sequencing/illumina_miseq_seq_stats.tsv

+species	MiSeq_read_pairs
+HAMBI_0006	531769
+HAMBI_0097	3698543
+HAMBI_0105	690772
+HAMBI_0262	3165389
+HAMBI_0403	588427
+HAMBI_1279	669969
+HAMBI_1287	673789
+HAMBI_1292	594696
+HAMBI_1299	559655
+HAMBI_1842	880164
+HAMBI_1896	656566
+HAMBI_1923	718883
+HAMBI_1972	637848
+HAMBI_1977	780085
+HAMBI_1988	692695
+HAMBI_2159	750507
+HAMBI_2160	712180
+HAMBI_2164	734486
+HAMBI_2443	770622
+HAMBI_2494	421884
+HAMBI_2659	692990
+HAMBI_2792	497250
+HAMBI_3031	596448
+HAMBI_3237	560102