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Simulation parameters are stored in [config files](config file). The energy of the system is calculated from simple [potentials](Potentials) between the different elements.
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## Modules
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* [sim_controller.py](sim_controller.py)
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* [SimController](SimController)
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* [AseSim](AseSim)
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* [SajuhakDynamics](SajuhakDynamics)
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* [KokkoPotential](KokkoPotential)
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* [vis.py](vis.py)
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* [sim_controller.py](modules/sim_controller.py)
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* [SimController](modules/SimController)
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* [AseSim](modules/AseSim)
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* [SajuhakDynamics](modules/SajuhakDynamics)
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* [KokkoPotential](modules/KokkoPotential)
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* [vis.py](modules/vis.py)
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