** Notice: all internal pipelines have been restricted to 30 minute timeouts, if your CI/CD runs take longer, either use your own runners or read below **
We would remind everyone that the CI/CD services provided by the university Gitlab servers are intended for CI/CD use only (ie. delivering new versions of your software to your production servers, etc).They are not intended for data analysis or -production use, or creating, building and running servers to do heavy data calculation or visualization.
As a general guideline; if your jobs take more than 15 minutes, you might be running something that is better suited for a dedicated system or a virtual server - in this case, please contact the helpdesk for a solution to your needs.
A bioinformatics project focusing on analyzing the human proteome. The project uses Pandas, BioPython and GOAtools to store, manipulate and analyse data structures. Project has the following goals:
A bioinformatics project focusing on analyzing the human proteome. The project uses Python tools (Pandas, BioPython, GOAtools) to store, manipulate and analyze data structures.
1. Could cysteines have a specific function in mitochondrial (MT) proteins, even if they would not form disulfides in the reducing environment inside the mitochondrion?
The project uses the UniProtKB/Swiss-Prot manually annotated and non-redundant protein sequence database for human proteome. The proteome was downloaded from the UniprotKB in 3/2022 and the project was made using the most current version in time being (attached to the folder).
2. Is the amino acid frequency of cysteine in MT proteins different from frequency in cytoplasmic proteins or extracellular proteins?
Project is made using Jupyter Notebook, notebook contains both computer code (e.g. python) and rich text elements (paragraph, equations, figures, links, etc…). Notebook documents are both human-readable documents containing the analysis description and the results (figures, tables, etc..) as well as executable documents which can be run to perform data analysis.
All used packages are listed in requirements.txt file. Any document of this project is freely usable as long as user refers to author of this project as a source.
