** Notice: all internal pipelines have been restricted to 30 minute timeouts, if your CI/CD runs take longer, either use your own runners or read below **
We would remind everyone that the CI/CD services provided by the university Gitlab servers are intended for CI/CD use only (ie. delivering new versions of your software to your production servers, etc).They are not intended for data analysis or -production use, or creating, building and running servers to do heavy data calculation or visualization.
As a general guideline; if your jobs take more than 15 minutes, you might be running something that is better suited for a dedicated system or a virtual server - in this case, please contact the helpdesk for a solution to your needs.
Magia is an automated processing pipeline for brain PET studies. Magia uses FreeSurfer to parcellate the brain into anatomical regions of interest, and performs kinetic modeling using tools developed over the years at Turku PET Center.
Magia has been shown to generate reference regions that yield results similar to results derived using manually delineated reference regions (Karjalainen et al. 2019, https://doi.org/10.3389/fninf.2020.00003). Please cite the paper if you use Magia.
Magia has been shown to generate reference regions that yield results similar to results derived using manually delineated reference regions (Karjalainen et al. 2020, https://doi.org/10.3389/fninf.2020.00003). Please cite the paper if you use Magia.
Please see the wiki page (https://github.com/tkkarjal/magia/wiki) for installation and usage instructions.
